Single-end and paired-end alignment results for Th1, Th2, CTL(listed as CD8100 in the file), and Th1BR, The2BR, and CTLBR: YigitNar2013Data.tar.gz
: the three single-end data sets (only uniquely aligned reads were kept) and the alignment results for three paired-end replicates (which contain non-unique reads as well. In the analyses in the paper, only the unique reads were included).