An R package for Nucleosomes Chemical Mapping data analysis.


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Documentation for package ‘NuCMap’ version 1.0

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NuCMap-package An R package for chemical nucleosome mapping data analysis.
callRED R function for defining redundant nucleosome map
callUNIQUE R function for defining unique nucleosome map
calOccup R function for calculating nucleosome occupancy genome-wide
estNCP1 R function for estimating NCP score and NCP score/noise ratio using one-template model
estNCP4 R function for estimating NCP score and NCP score/noise ratio using four-template model
estNCPcall R function for estimating NCP score, NCP/noise ratio and making unique nucleosome center calls using four-template model.
NuCMap An R package for chemical nucleosome mapping data analysis.
peakDIST R function for Crick-Watson cleavage peak-peak distance diagnostic.
plotAATT R function for plotting AA/TT/TA/AT frequency against to the distance from the nucleosome center
plotCUTS R function for visualizing the cleavage frequency on Watson and Crick strands
trainTEMP1 R function for training one-template model
trainTEMP4 R function for training four-template model