NuCMap-package |
An R package for chemical nucleosome mapping data analysis. |
callRED |
R function for defining redundant nucleosome map |
callUNIQUE |
R function for defining unique nucleosome map |
calOccup |
R function for calculating nucleosome occupancy genome-wide |
estNCP1 |
R function for estimating NCP score and NCP score/noise ratio using one-template model |
estNCP4 |
R function for estimating NCP score and NCP score/noise ratio using four-template model |
estNCPcall |
R function for estimating NCP score, NCP/noise ratio and making unique nucleosome center calls using four-template model. |
NuCMap |
An R package for chemical nucleosome mapping data analysis. |
peakDIST |
R function for Crick-Watson cleavage peak-peak distance diagnostic. |
plotAATT |
R function for plotting AA/TT/TA/AT frequency against to the distance from the nucleosome center |
plotCUTS |
R function for visualizing the cleavage frequency on Watson and Crick strands |
trainTEMP1 |
R function for training one-template model |
trainTEMP4 |
R function for training four-template model |